Annotation of co-expression genes

PH01000526G0260's details annotation

1.Annotation

ICBR annotation: ATKINESIN-13A/KINESIN-13A, putative, expressed

Blast result AT3G16630 : 0.00E+00
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein

2.Location

Scaffold: PH01000526
Strand: -

RegionStartEnd
gene189460197974
mRNA189460197974
exon189460189767
exon190109190174
exon190252190870
exon191001191219
exon191352191684
exon192450192612
exon193182193263
exon193410193487
exon194358194462
exon194593194769
exon194991195224
exon196891197974
CDS189654189767
CDS190109190174
CDS190252190870
CDS191001191219
CDS191352191684
CDS192450192612
CDS193182193263
CDS193410193487
CDS194358194462
CDS194593194769
CDS194991195224
CDS196891197043

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00225.22Kinesin190518

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003777microtubule motor activity
GO:0005524ATP binding
GO:0005875microtubule associated complex
GO:0007018microtubule-based movement

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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