Annotation of co-expression genes

PH01000538G0570's details annotation

1.Annotation

ICBR annotation: SUMO-activating enzyme subunit 2, putative, expressed

Blast result AT2G21470 : 0.00E+00
Blast annotation: SUMO-activating enzyme 2

2.Location

Scaffold: PH01000538
Strand: -

RegionStartEnd
gene371573379401
mRNA371573379401
exon371573372628
exon373176373273
exon373431373613
exon373701373794
exon374048374277
exon374352374798
exon375697375798
exon376938377156
exon377265377348
exon378059378175
exon378474378563
exon378690379401
CDS372319372628
CDS373176373273
CDS373431373613
CDS373701373794
CDS374048374277
CDS374352374798
CDS375697375798
CDS376938377156
CDS377265377348
CDS378059378175
CDS378474378563
CDS378690378722

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00899.20ThiF541
PF00899.20ThiF78442
PF10585.8UBA_e1_thiolCys305404
PF14732.5UAE_UbL477569

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Ubiquitin mediated proteolysisubiquitin-like 1-activating enzyme E1 B [EC:6.3.2.1]ko04120K10685

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0005524ATP binding
GO:0006464cellular protein modification process
GO:0008641small protein activating enzyme activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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