PH01000541G0110's details annotation
1.Annotation
ICBR annotation: pentatricopeptide containing protein, putative, expressed
Blast result AT2G41720 : 7.00E-166
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01000541
Strand: -
| Region | Start | End |
| gene | 82959 | 90473 |
| mRNA | 82959 | 90473 |
| exon | 82959 | 83160 |
| exon | 83277 | 83381 |
| exon | 84067 | 84199 |
| exon | 84487 | 84589 |
| exon | 85780 | 85885 |
| exon | 85992 | 87065 |
| exon | 87770 | 87843 |
| exon | 88134 | 90473 |
| CDS | 83128 | 83160 |
| CDS | 83277 | 83381 |
| CDS | 84067 | 84199 |
| CDS | 84487 | 84589 |
| CDS | 85780 | 85885 |
| CDS | 85992 | 87065 |
| CDS | 87770 | 87843 |
| CDS | 88134 | 88299 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13041.5 | PPR_2 | 83 | 130 |
| PF13041.5 | PPR_2 | 153 | 202 |
| PF01535.19 | PPR | 228 | 258 |
| PF13041.5 | PPR_2 | 260 | 307 |
| PF13041.5 | PPR_2 | 366 | 414 |
| PF13041.5 | PPR_2 | 436 | 470 |
| PF01535.19 | PPR | 533 | 559 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.