PH01000542G0140's details annotation
1.Annotation
ICBR annotation: glycosyl transferase, family 8, putative, expressed
Blast result AT2G38650 : 5.00E-148
Blast annotation: galacturonosyltransferase 7
2.Location
Scaffold: PH01000542
Strand: -
| Region | Start | End |
| gene | 102620 | 115040 |
| mRNA | 102620 | 115040 |
| exon | 102620 | 103404 |
| exon | 103501 | 103572 |
| exon | 104838 | 104991 |
| exon | 106297 | 106569 |
| exon | 106832 | 107374 |
| exon | 107457 | 107814 |
| exon | 108145 | 108446 |
| exon | 108651 | 108724 |
| exon | 109245 | 109332 |
| exon | 109867 | 109974 |
| exon | 110099 | 110127 |
| exon | 110350 | 110526 |
| exon | 111433 | 111504 |
| exon | 112236 | 112318 |
| exon | 113247 | 113350 |
| exon | 113776 | 113809 |
| exon | 114099 | 114204 |
| exon | 114258 | 115040 |
| CDS | 102710 | 103404 |
| CDS | 103501 | 103572 |
| CDS | 104838 | 104991 |
| CDS | 106297 | 106569 |
| CDS | 106832 | 107374 |
| CDS | 107457 | 107814 |
| CDS | 108145 | 108446 |
| CDS | 108651 | 108724 |
| CDS | 109245 | 109332 |
| CDS | 109867 | 109974 |
| CDS | 110099 | 110127 |
| CDS | 110350 | 110526 |
| CDS | 111433 | 111504 |
| CDS | 112236 | 112318 |
| CDS | 113247 | 113350 |
| CDS | 113776 | 113809 |
| CDS | 114099 | 114204 |
| CDS | 114258 | 114441 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01501.19 | Glyco_transf_8 | 518 | 820 |
| PF00403.25 | HMA | 899 | 948 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Starch and sucrose metabolism | alpha-1,4-galacturonosyltransferase [EC:2.4.1.43] | ko00500 | K13648 |
| Amino sugar and nucleotide sugar metabolism | alpha-1,4-galacturonosyltransferase [EC:2.4.1.43] | ko00520 | K13648 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016757 | transferase activity, transferring glycosyl groups |
| GO:0030001 | metal ion transport |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.