PH01000551G0450's details annotation
1.Annotation
ICBR annotation: calcineurin B, putative, expressed
Blast result AT4G26570 : 3.80E-92
Blast annotation: calcineurin B-like 3
2.Location
Scaffold: PH01000551
Strand: -
| Region | Start | End |
| gene | 256724 | 263128 |
| mRNA | 256724 | 263128 |
| exon | 256724 | 257387 |
| exon | 259475 | 259587 |
| exon | 259676 | 259756 |
| exon | 260264 | 260331 |
| exon | 260846 | 260954 |
| exon | 261425 | 261484 |
| exon | 261585 | 261667 |
| exon | 261798 | 263128 |
| CDS | 257330 | 257387 |
| CDS | 259475 | 259587 |
| CDS | 259676 | 259756 |
| CDS | 260264 | 260331 |
| CDS | 260846 | 260954 |
| CDS | 261425 | 261484 |
| CDS | 261585 | 261667 |
| CDS | 261798 | 261921 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13833.5 | EF-hand_8 | 64 | 110 |
| PF13202.5 | EF-hand_5 | 173 | 197 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.