PH01000553G0220's details annotation
1.Annotation
ICBR annotation: cupin 2, conserved barrel domain protein, putative, expressed
Blast result AT4G17050 : 2.30E-77
Blast annotation: ureidoglycine aminohydrolase
2.Location
Scaffold: PH01000553
Strand: +
| Region | Start | End |
| gene | 169177 | 176274 |
| mRNA | 169177 | 176274 |
| exon | 169177 | 169548 |
| exon | 170662 | 170749 |
| exon | 170825 | 170901 |
| exon | 171298 | 171337 |
| exon | 171845 | 171911 |
| exon | 173550 | 173606 |
| exon | 174031 | 174069 |
| exon | 174271 | 174341 |
| exon | 174836 | 174920 |
| exon | 175553 | 176274 |
| CDS | 169224 | 169548 |
| CDS | 170662 | 170749 |
| CDS | 170825 | 170901 |
| CDS | 171298 | 171337 |
| CDS | 171845 | 171911 |
| CDS | 173550 | 173606 |
| CDS | 174031 | 174069 |
| CDS | 174271 | 174341 |
| CDS | 174836 | 174920 |
| CDS | 175553 | 175651 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Purine metabolism | ureidoglycine aminohydrolase [EC:3.5.3.-] | ko00230 | K14977 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.