PH01000569G0440's details annotation
1.Annotation
ICBR annotation: NHL repeat-containing protein, putative, expressed
Blast result AT1G70280 : 6.00E-120
Blast annotation: NHL domain-containing protein
2.Location
Scaffold: PH01000569
Strand: +
| Region | Start | End |
| gene | 319956 | 326069 |
| mRNA | 319956 | 326069 |
| exon | 319956 | 320542 |
| exon | 320613 | 320693 |
| exon | 320790 | 320966 |
| exon | 321560 | 321730 |
| exon | 323554 | 323763 |
| exon | 323911 | 323999 |
| exon | 324629 | 326069 |
| CDS | 320437 | 320542 |
| CDS | 320613 | 320693 |
| CDS | 320790 | 320966 |
| CDS | 321560 | 321730 |
| CDS | 323554 | 323763 |
| CDS | 323911 | 323999 |
| CDS | 324629 | 325303 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.