PH01000602G0300's details annotation
1.Annotation
ICBR annotation: CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Blast result AT5G60550 : 3.00E-127
Blast annotation: geminivirus rep interacting kinase 2
2.Location
Scaffold: PH01000602
Strand: +
| Region | Start | End |
| gene | 183781 | 187743 |
| mRNA | 183781 | 187743 |
| exon | 183781 | 184067 |
| exon | 184353 | 184427 |
| exon | 184494 | 184538 |
| exon | 184887 | 184961 |
| exon | 185520 | 185607 |
| exon | 185727 | 185836 |
| exon | 185982 | 186077 |
| exon | 186578 | 186644 |
| exon | 186914 | 187029 |
| exon | 187110 | 187188 |
| exon | 187274 | 187743 |
| CDS | 183900 | 184067 |
| CDS | 184353 | 184427 |
| CDS | 184494 | 184538 |
| CDS | 184887 | 184961 |
| CDS | 185520 | 185607 |
| CDS | 185727 | 185836 |
| CDS | 185982 | 186077 |
| CDS | 186578 | 186644 |
| CDS | 186914 | 187029 |
| CDS | 187110 | 187188 |
| CDS | 187274 | 187419 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 67 | 323 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.