PH01000620G0360's details annotation
1.Annotation
ICBR annotation: tetratricopeptide repeat domain containing protein, expressed
Blast result AT1G22700 : 1.20E-68
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01000620
Strand: +
| Region | Start | End |
| gene | 240583 | 250161 |
| mRNA | 240583 | 250161 |
| exon | 240583 | 245854 |
| exon | 246446 | 246606 |
| exon | 247855 | 247962 |
| exon | 248074 | 248118 |
| exon | 248843 | 248989 |
| exon | 249500 | 250161 |
| CDS | 245746 | 245854 |
| CDS | 246446 | 246606 |
| CDS | 247855 | 247962 |
| CDS | 248074 | 248118 |
| CDS | 248843 | 248989 |
| CDS | 249500 | 249781 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000859 | RLK-Pelle_LRR-Xa (from iTAK) transcription termination, DNA-dependent, thylakoid membrane, photosystem I, CAMK_CDPK (from iTAK) Photosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13424.5 | TPR_12 | 156 | 218 |
| PF00515.27 | TPR_1 | 225 | 256 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.