Annotation of co-expression genes

PH01000623G0600's details annotation

1.Annotation

ICBR annotation: pumilio domain-containing protein PPD1, putative, expressed

Blast result AT3G20250 : 0.00E+00
Blast annotation: pumilio 5

2.Location

Scaffold: PH01000623
Strand: -

RegionStartEnd
gene385316394639
mRNA385316394639
exon385316386335
exon386433386604
exon386959387153
exon387538387648
exon387741387953
exon389068389175
exon389338389479
exon389569390992
exon392486394639
CDS386313386335
CDS386433386604
CDS386959387153
CDS387538387648
CDS387741387953
CDS389068389175
CDS389338389479
CDS389569390992
CDS392486393118

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001501

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00806.18PUF682707
PF00806.18PUF714746
PF00806.18PUF753779
PF00806.18PUF788812
PF00806.18PUF824848
PF00806.18PUF895927
PF00806.18PUF939970

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding
GO:0005488binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.