PH01000642G0600's details annotation
1.Annotation
ICBR annotation: chloroplast channel forming outer membrane protein, putative, expressed
Blast result AT1G76405 : 2.00E-45
Blast annotation: -
2.Location
Scaffold: PH01000642
Strand: -
| Region | Start | End |
| gene | 364181 | 367593 |
| mRNA | 364181 | 367593 |
| exon | 364181 | 365053 |
| exon | 366147 | 366245 |
| exon | 366407 | 366565 |
| exon | 366805 | 367593 |
| CDS | 364970 | 365053 |
| CDS | 366147 | 366245 |
| CDS | 366407 | 366565 |
| CDS | 366805 | 367116 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001426 | protein import into mitochondrial outer membrane, cell volume homeostasis, 'de novo' IMP biosynthetic process, mitochondrial outer membrane translocase complex, chloride transport, phosphoribosylformylglycinamidine cyclo-ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.