Annotation of co-expression genes

PH01000644G0700's details annotation

1.Annotation

ICBR annotation: copper-transporting ATPase, putative, expressed

Blast result AT1G63440 : 0
Blast annotation: heavy metal atpase 5

2.Location

Scaffold: PH01000644
Strand: +

RegionStartEnd
gene512377520048
mRNA512377520048
exon512377513455
exon514004514749
exon515029515500
exon515590515757
exon516216516470
exon516605516727
exon516899517384
exon517463517885
exon519427519493
exon519584520048
CDS513189513455
CDS514004514749
CDS515029515500
CDS515590515757
CDS516216516470
CDS516605516727
CDS516899517384
CDS517463517885
CDS519427519493
CDS519584519675

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00403.25HMA4398
PF00403.25HMA117176
PF00122.19E1-E2_ATPase426620
PF00702.25Hydrolase637862

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005507copper ion binding
GO:0006812cation transport
GO:0006825copper ion transport
GO:0016021integral to membrane
GO:0019829cation-transporting ATPase activity
GO:0030001metal ion transport
GO:0043682copper-transporting ATPase activity
GO:0046872metal ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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