PH01000681G0040's details annotation
1.Annotation
ICBR annotation: ribosomal protein L7Ae, putative, expressed
Blast result AT2G32060 : 1.60E-47
Blast annotation: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
2.Location
Scaffold: PH01000681
Strand: -
| Region | Start | End |
| gene | 21544 | 23547 |
| mRNA | 21544 | 23547 |
| exon | 21544 | 21699 |
| exon | 21794 | 21859 |
| exon | 22168 | 22456 |
| exon | 23355 | 23547 |
| CDS | 21640 | 21699 |
| CDS | 21794 | 21859 |
| CDS | 22168 | 22456 |
| CDS | 23355 | 23359 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000262 | Ribosome translation, structural constituent of ribosome, proton-transporting ATP synthase complex assembly, intracellular, signal peptidase complex, signal peptide processing, mRNA processing, Ribosome peptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01248.25 | Ribosomal_L7Ae | 25 | 118 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S12e | ko03011 | K02951 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.