PH01000692G0710's details annotation
1.Annotation
ICBR annotation: DENN domain containing protein, expressed
Blast result AT5G35560 : 1.30E-89
Blast annotation: DENN (AEX-3) domain-containing protein
2.Location
Scaffold: PH01000692
Strand: -
| Region | Start | End |
| gene | 477571 | 492183 |
| mRNA | 477571 | 492183 |
| exon | 477571 | 477726 |
| exon | 479400 | 479465 |
| exon | 480258 | 480392 |
| exon | 480714 | 480791 |
| exon | 481080 | 481130 |
| exon | 481787 | 481849 |
| exon | 482579 | 482668 |
| exon | 482805 | 483002 |
| exon | 483097 | 483223 |
| exon | 483630 | 484280 |
| exon | 485207 | 485295 |
| exon | 485538 | 485597 |
| exon | 486259 | 486342 |
| exon | 486550 | 486741 |
| exon | 487636 | 487912 |
| exon | 489886 | 489896 |
| exon | 490481 | 492183 |
| CDS | 477643 | 477726 |
| CDS | 479400 | 479465 |
| CDS | 480258 | 480392 |
| CDS | 480714 | 480791 |
| CDS | 481080 | 481130 |
| CDS | 481787 | 481849 |
| CDS | 482579 | 482668 |
| CDS | 482805 | 483002 |
| CDS | 483097 | 483223 |
| CDS | 483630 | 484280 |
| CDS | 485207 | 485295 |
| CDS | 485538 | 485597 |
| CDS | 486259 | 486342 |
| CDS | 486550 | 486741 |
| CDS | 487636 | 487912 |
| CDS | 489886 | 489896 |
| CDS | 490481 | 490783 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000810 | CAMTA Transcription_Regulator(from PlantTFDB) glycerol-3-phosphate dehydrogenase complex, Valine,_leucine_and_isoleucine_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02141.20 | DENN | 716 | 755 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.