PH01000709G0540's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result AT3G16090 : 7.00E-158
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01000709
Strand: +
| Region | Start | End |
| gene | 379339 | 386685 |
| mRNA | 379339 | 386685 |
| exon | 379339 | 380823 |
| exon | 381923 | 382033 |
| exon | 384321 | 384937 |
| exon | 385629 | 385805 |
| exon | 385887 | 386036 |
| exon | 386123 | 386328 |
| exon | 386454 | 386685 |
| CDS | 380623 | 380823 |
| CDS | 381923 | 382033 |
| CDS | 384321 | 384937 |
| CDS | 385629 | 385805 |
| CDS | 385887 | 386036 |
| CDS | 386123 | 386328 |
| CDS | 386454 | 386647 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13639.5 | zf-RING_2 | 423 | 462 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | E3 ubiquitin-protein ligase synoviolin [EC:6.3.2.19] | ko04141 | K10601 |
| Ubiquitin mediated proteolysis | E3 ubiquitin-protein ligase synoviolin [EC:6.3.2.19] | ko04120 | K10601 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.