PH01000724G0210's details annotation
1.Annotation
ICBR annotation: cyclin, putative, expressed
Blast result AT1G76310 : 1.00E-114
Blast annotation: CYCLIN B2;4
2.Location
Scaffold: PH01000724
Strand: +
| Region | Start | End |
| gene | 120218 | 124546 |
| mRNA | 120218 | 124546 |
| exon | 120218 | 121774 |
| exon | 121865 | 121994 |
| exon | 122081 | 122143 |
| exon | 122231 | 122276 |
| exon | 122744 | 122869 |
| exon | 122939 | 123076 |
| exon | 123163 | 123252 |
| exon | 123346 | 123567 |
| exon | 123658 | 123756 |
| exon | 123856 | 124546 |
| CDS | 121729 | 121774 |
| CDS | 121865 | 121994 |
| CDS | 122081 | 122143 |
| CDS | 122231 | 122276 |
| CDS | 122744 | 122869 |
| CDS | 122939 | 123076 |
| CDS | 123163 | 123252 |
| CDS | 123346 | 123567 |
| CDS | 123658 | 123756 |
| CDS | 123856 | 124269 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001655 | transport, transmembrane transport, regulation_of_cell_cycle transporter activity, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00134.22 | Cyclin_N | 174 | 299 |
| PF02984.18 | Cyclin_C | 302 | 380 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity |
| GO:0005634 | nucleus |
| GO:0019901 | protein kinase binding |
| GO:0051726 | regulation of cell cycle |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.