PH01000746G0460's details annotation
1.Annotation
ICBR annotation: transporter family protein, putative, expressed
Blast result AT1G06470 : 3.10E-70
Blast annotation: Nucleotide/sugar transporter family protein
2.Location
Scaffold: PH01000746
Strand: +
| Region | Start | End |
| gene | 319745 | 326395 |
| mRNA | 319745 | 326395 |
| exon | 319745 | 320491 |
| exon | 320599 | 320771 |
| exon | 321475 | 321560 |
| exon | 321646 | 321695 |
| exon | 322514 | 322581 |
| exon | 324207 | 324307 |
| exon | 325276 | 325362 |
| exon | 325464 | 325558 |
| exon | 326251 | 326395 |
| CDS | 320373 | 320491 |
| CDS | 320599 | 320771 |
| CDS | 321475 | 321560 |
| CDS | 321646 | 321695 |
| CDS | 322514 | 322581 |
| CDS | 324207 | 324307 |
| CDS | 325276 | 325362 |
| CDS | 325464 | 325558 |
| CDS | 326251 | 326374 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03151.15 | TPT | 23 | 192 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.