PH01000759G0260's details annotation
1.Annotation
ICBR annotation: WD repeat-containing protein, putative, expressed
Blast result AT4G22910 : 0.00E+00
Blast annotation: FIZZY-related 2
2.Location
Scaffold: PH01000759
Strand: -
| Region | Start | End |
| gene | 191353 | 198437 |
| mRNA | 191353 | 198437 |
| exon | 191353 | 191432 |
| exon | 192559 | 192627 |
| exon | 192729 | 192791 |
| exon | 192875 | 192976 |
| exon | 193408 | 193602 |
| exon | 193697 | 193759 |
| exon | 193918 | 194097 |
| exon | 194582 | 194686 |
| exon | 194767 | 194889 |
| exon | 195105 | 195566 |
| exon | 198069 | 198437 |
| CDS | 191373 | 191432 |
| CDS | 192559 | 192627 |
| CDS | 192729 | 192791 |
| CDS | 192875 | 192976 |
| CDS | 193408 | 193602 |
| CDS | 193697 | 193759 |
| CDS | 193918 | 194097 |
| CDS | 194582 | 194686 |
| CDS | 194767 | 194889 |
| CDS | 195105 | 195566 |
| CDS | 198069 | 198242 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000097 | GT59 GlycosylTransferases mRNA_cleavage_factor_complex Other_types_of_O-glycan_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12894.6 | ANAPC4_WD40 | 256 | 315 |
| PF00400.31 | WD40 | 338 | 374 |
| PF00400.31 | WD40 | 379 | 419 |
| PF00400.31 | WD40 | 468 | 504 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | cell division cycle 20-like protein 1, cofactor of APC complex | ko04120 | K03364 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.