PH01000763G0270's details annotation
1.Annotation
ICBR annotation: transport protein particle component, Bet3, domain containing protein, expressed
Blast result AT5G58030 : 7.10E-49
Blast annotation: Transport protein particle (TRAPP) component
2.Location
Scaffold: PH01000763
Strand: -
| Region | Start | End |
| gene | 264240 | 270039 |
| mRNA | 264240 | 270039 |
| exon | 264240 | 264321 |
| exon | 264533 | 264610 |
| exon | 265110 | 265173 |
| exon | 266230 | 266318 |
| exon | 267455 | 270039 |
| CDS | 264268 | 264321 |
| CDS | 264533 | 264610 |
| CDS | 265110 | 265173 |
| CDS | 266230 | 266318 |
| CDS | 267455 | 267526 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04051.15 | TRAPP | 30 | 103 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.