PH01000767G0370's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
Blast result AT2G39120 : 1.10E-83
Blast annotation: Ubiquitin carboxyl-terminal hydrolase family protein
2.Location
Scaffold: PH01000767
Strand: +
| Region | Start | End |
| gene | 233555 | 238901 |
| mRNA | 233555 | 238901 |
| exon | 233555 | 235531 |
| exon | 235861 | 235904 |
| exon | 237350 | 237481 |
| exon | 237578 | 237715 |
| exon | 237789 | 237870 |
| exon | 237966 | 238044 |
| exon | 238319 | 238901 |
| CDS | 234433 | 235531 |
| CDS | 235861 | 235904 |
| CDS | 237350 | 237481 |
| CDS | 237578 | 237715 |
| CDS | 237789 | 237870 |
| CDS | 237966 | 238044 |
| CDS | 238319 | 238334 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11955.7 | PORR | 11 | 345 |
| PF00888.21 | Cullin | 382 | 490 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
| GO:0031461 | cullin-RING ubiquitin ligase complex |
| GO:0031625 | ubiquitin protein ligase binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.