Annotation of co-expression genes

PH01000780G0690's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, putative, expressed

Blast result AT5G16260 : 3.30E-97
Blast annotation: RNA binding (RRM/RBD/RNP motifs) family protein

2.Location

Scaffold: PH01000780
Strand: -

RegionStartEnd
gene460479467073
mRNA460479467073
exon460479460498
exon460538460618
exon460710460786
exon461235461315
exon461389461491
exon461576461665
exon462826462864
exon463002463094
exon463187463396
exon464518464738
exon464831464959
exon465569467073
CDS460487460498
CDS460538460618
CDS460710460786
CDS461235461315
CDS461389461491
CDS461576461665
CDS462826462864
CDS463002463094
CDS463187463396
CDS464518464738
CDS464831464959
CDS465569465905

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14237.5DUF433993137
PF00076.21RRM_1317389

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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