PH01000796G0390's details annotation
1.Annotation
ICBR annotation: OsFBX48 - F-box domain containing protein, expressed
Blast result AT4G05475 : 1.60E-44
Blast annotation: RNI-like superfamily protein
2.Location
Scaffold: PH01000796
Strand: -
| Region | Start | End |
| gene | 303014 | 306997 |
| mRNA | 303014 | 306997 |
| exon | 303014 | 304454 |
| exon | 306458 | 306997 |
| CDS | 303809 | 304454 |
| CDS | 306458 | 306771 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12937.6 | F-box-like | 12 | 57 |
| PF13516.5 | LRR_6 | 108 | 125 |
| PF13516.5 | LRR_6 | 198 | 216 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.