PH01000803G0520's details annotation
1.Annotation
ICBR annotation: vesicle transport v-SNARE protein, putative, expressed
Blast result AT5G39510 : 1.10E-38
Blast annotation: Vesicle transport v-SNARE family protein
2.Location
Scaffold: PH01000803
Strand: +
| Region | Start | End |
| gene | 382097 | 386254 |
| mRNA | 382097 | 386254 |
| exon | 382097 | 383225 |
| exon | 383353 | 383411 |
| exon | 383756 | 383944 |
| exon | 385617 | 386254 |
| CDS | 383132 | 383225 |
| CDS | 383353 | 383411 |
| CDS | 383756 | 383944 |
| CDS | 385617 | 386165 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05008.14 | V-SNARE | 12 | 90 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0006886 | intracellular protein transport |
| GO:0008270 | zinc ion binding |
| GO:0016020 | membrane |
| GO:0016192 | vesicle-mediated transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.