PH01000804G0270's details annotation
1.Annotation
ICBR annotation: GDP-mannose transporter, putative
Blast result AT1G07290 : 1.00E-129
Blast annotation: golgi nucleotide sugar transporter 2
2.Location
Scaffold: PH01000804
Strand: -
| Region | Start | End |
| gene | 178045 | 182349 |
| mRNA | 178045 | 182349 |
| exon | 178045 | 178893 |
| exon | 178989 | 179086 |
| exon | 179215 | 179331 |
| exon | 179814 | 179968 |
| exon | 180238 | 180336 |
| exon | 180481 | 180610 |
| exon | 180822 | 180961 |
| exon | 181144 | 181333 |
| exon | 181419 | 182349 |
| CDS | 178850 | 178893 |
| CDS | 178989 | 179086 |
| CDS | 179215 | 179331 |
| CDS | 179814 | 179968 |
| CDS | 180238 | 180336 |
| CDS | 180481 | 180610 |
| CDS | 180822 | 180961 |
| CDS | 181144 | 181333 |
| CDS | 181419 | 181621 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03151.15 | TPT | 103 | 379 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.