PH01000817G0140's details annotation
1.Annotation
ICBR annotation: E3 ubiquitin ligase, putative, expressed
Blast result AT3G18290 : 0.00E+00
Blast annotation: zinc finger protein-related
2.Location
Scaffold: PH01000817
Strand: +
| Region | Start | End |
| gene | 112990 | 125456 |
| mRNA | 112990 | 125456 |
| exon | 112990 | 113916 |
| exon | 114900 | 115109 |
| exon | 116137 | 116331 |
| exon | 116417 | 116772 |
| exon | 117623 | 117848 |
| exon | 117933 | 118101 |
| exon | 118345 | 119451 |
| exon | 120175 | 120346 |
| exon | 120416 | 120555 |
| exon | 120599 | 120637 |
| exon | 120939 | 120985 |
| exon | 121740 | 121838 |
| exon | 123311 | 123370 |
| exon | 124859 | 124930 |
| exon | 125332 | 125456 |
| CDS | 113644 | 113916 |
| CDS | 114900 | 115109 |
| CDS | 116137 | 116331 |
| CDS | 116417 | 116772 |
| CDS | 117623 | 117848 |
| CDS | 117933 | 118101 |
| CDS | 118345 | 119451 |
| CDS | 120175 | 120346 |
| CDS | 120416 | 120555 |
| CDS | 120599 | 120637 |
| CDS | 120939 | 120985 |
| CDS | 121740 | 121838 |
| CDS | 123311 | 123370 |
| CDS | 124859 | 124930 |
| CDS | 125332 | 125442 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01814.22 | Hemerythrin | 42 | 166 |
| PF01814.22 | Hemerythrin | 292 | 424 |
| PF01814.22 | Hemerythrin | 599 | 761 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.