PH01000818G0190's details annotation
1.Annotation
ICBR annotation: transcription elongation factor 1, putative, expressed
Blast result AT5G46030 : 9.40E-38
Blast annotation: -
2.Location
Scaffold: PH01000818
Strand: +
| Region | Start | End |
| gene | 215671 | 217823 |
| mRNA | 215671 | 217823 |
| exon | 215671 | 216648 |
| exon | 216743 | 216813 |
| exon | 217491 | 217512 |
| exon | 217616 | 217823 |
| CDS | 216536 | 216648 |
| CDS | 216743 | 216813 |
| CDS | 217491 | 217512 |
| CDS | 217616 | 217679 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000248 | CAMK_CDPK (from iTAK) multicellular organismal development, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05129.12 | Elf1 | 2 | 78 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.