PH01000826G0170's details annotation
1.Annotation
ICBR annotation: HEN1, putative, expressed
Blast result AT4G20910 : 1.00E-152
Blast annotation: double-stranded RNA binding protein-related / DsRBD protein-related
2.Location
Scaffold: PH01000826
Strand: +
| Region | Start | End |
| gene | 78823 | 85245 |
| mRNA | 78823 | 85245 |
| exon | 78823 | 79129 |
| exon | 79160 | 79537 |
| exon | 80174 | 80275 |
| exon | 81270 | 81362 |
| exon | 81682 | 82139 |
| exon | 82240 | 82488 |
| exon | 82724 | 83661 |
| exon | 83754 | 83905 |
| exon | 83981 | 84097 |
| exon | 84203 | 84331 |
| exon | 84677 | 85245 |
| CDS | 79067 | 79129 |
| CDS | 79160 | 79537 |
| CDS | 80174 | 80275 |
| CDS | 81270 | 81362 |
| CDS | 81682 | 82139 |
| CDS | 82240 | 82488 |
| CDS | 82724 | 83661 |
| CDS | 83754 | 83905 |
| CDS | 83981 | 84097 |
| CDS | 84203 | 84331 |
| CDS | 84677 | 85114 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001465 | cellular_homeostasis mitochondrial outer membrane, Peroxisome RNA methylation, Mismatch_repair Mismatch_repair C2H2 Transcription_Regulator(from PlantTFDB) RNA_degradation mismatched DNA binding, O-methyltransferase activity, hydrolase_activity,_acting_on_acid_anhydrides RNA methyltransferase activity, |
| coexpression network | CFinderM001625 | SNF2 Transcription_Regulator(from iTAK) cellular_homeostasis mitochondrial outer membrane, RNA methylation, Homologous_recombination |
| coexpression network | CFinderM001767 | RLK-Pelle_PERK-1 (from iTAK) RNA methylation, nucleoside transmembrane transporter activity, carboxyl- or carbamoyltransferase activity, RNA methyltransferase activity, O-methyltransferase activity, RNA_transport cellular amino acid metabolic process, amino acid binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08242.11 | Methyltransf_12 | 812 | 907 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0001510 | RNA methylation |
| GO:0008171 | O-methyltransferase activity |
| GO:0008173 | RNA methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.