PH01000826G0530's details annotation
1.Annotation
ICBR annotation: PHD-finger domain containing protein, expressed
Blast result AT2G36720 : 1.70E-68
Blast annotation: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain
2.Location
Scaffold: PH01000826
Strand: -
| Region | Start | End |
| gene | 328584 | 334478 |
| mRNA | 328584 | 334478 |
| exon | 328584 | 329155 |
| exon | 329446 | 329503 |
| exon | 330074 | 330284 |
| exon | 330724 | 330890 |
| exon | 330966 | 331018 |
| exon | 331380 | 331418 |
| exon | 331739 | 334478 |
| CDS | 328877 | 329155 |
| CDS | 329446 | 329503 |
| CDS | 330074 | 330284 |
| CDS | 330724 | 330890 |
| CDS | 330966 | 331018 |
| CDS | 331380 | 331418 |
| CDS | 331739 | 332527 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | PHD |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00628.28 | PHD | 328 | 369 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | autoimmune regulator | ko04120 | K10603 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.