PH01000834G0020's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, putative, expressed
Blast result AT1G20880 : 7.00E-45
Blast annotation: RNA-binding (RRM/RBD/RNP motifs) family protein
2.Location
Scaffold: PH01000834
Strand: -
| Region | Start | End |
| gene | 16619 | 20336 |
| mRNA | 16619 | 20336 |
| exon | 16619 | 16762 |
| exon | 16838 | 16957 |
| exon | 17226 | 17285 |
| exon | 17723 | 17780 |
| exon | 18943 | 19066 |
| exon | 19658 | 20336 |
| CDS | 16669 | 16762 |
| CDS | 16838 | 16957 |
| CDS | 17226 | 17285 |
| CDS | 17723 | 17780 |
| CDS | 18943 | 19066 |
| CDS | 19658 | 19906 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 40 | 95 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.