PH01000863G0530's details annotation
1.Annotation
ICBR annotation: cullin, putative, expressed
Blast result AT4G02570 : 1.50E-32
Blast annotation: cullin 1
2.Location
Scaffold: PH01000863
Strand: -
| Region | Start | End |
| gene | 387453 | 389713 |
| mRNA | 387453 | 389713 |
| exon | 387453 | 388092 |
| exon | 388658 | 388757 |
| exon | 388862 | 389713 |
| CDS | 387907 | 388092 |
| CDS | 388658 | 388757 |
| CDS | 388862 | 389001 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000170 | cullin-RING ubiquitin ligase complex, ubiquitin protein ligase binding, ubiquitin-dependent protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00888.21 | Cullin | 35 | 95 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
| GO:0031461 | cullin-RING ubiquitin ligase complex |
| GO:0031625 | ubiquitin protein ligase binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.