Annotation of co-expression genes

PH01000868G0220's details annotation

1.Annotation

ICBR annotation: protein kinase domain containing protein, expressed

Blast result AT1G08720 : 0.00E+00
Blast annotation: Protein kinase superfamily protein

2.Location

Scaffold: PH01000868
Strand: -

RegionStartEnd
gene154242165560
mRNA154242165560
exon154242155110
exon156250156302
exon156651156827
exon157438157487
exon157605157673
exon157772157870
exon157949158027
exon158383158483
exon158601158669
exon158845158885
exon159389160632
exon160794160897
exon161292161298
exon162151162467
exon164113165560
CDS154908155110
CDS156250156302
CDS156651156827
CDS157438157487
CDS157605157673
CDS157772157870
CDS157949158027
CDS158383158483
CDS158601158669
CDS158845158885
CDS159389160632
CDS160794160897
CDS161292161298
CDS162151162467
CDS164113164547

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14381.5EDR1137252
PF14381.5EDR1254302
PF07714.16Pkinase_Tyr695931

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.