PH01000873G0610's details annotation
1.Annotation
ICBR annotation: aminotransferase, putative, expressed
Blast result AT5G57590 : 2.00E-108
Blast annotation: adenosylmethionine-8-amino-7-oxononanoate transaminases
2.Location
Scaffold: PH01000873
Strand: +
| Region | Start | End |
| gene | 461399 | 472455 |
| mRNA | 461399 | 472455 |
| exon | 461399 | 463352 |
| exon | 463570 | 463629 |
| exon | 464251 | 464421 |
| exon | 464541 | 464802 |
| exon | 464913 | 464996 |
| exon | 465149 | 465269 |
| exon | 465700 | 465848 |
| exon | 468302 | 468340 |
| exon | 468989 | 469488 |
| exon | 469851 | 469956 |
| exon | 470207 | 470301 |
| exon | 470800 | 470909 |
| exon | 471257 | 471390 |
| exon | 471478 | 471609 |
| exon | 471750 | 471884 |
| exon | 472255 | 472455 |
| CDS | 463192 | 463352 |
| CDS | 463570 | 463629 |
| CDS | 464251 | 464421 |
| CDS | 464541 | 464802 |
| CDS | 464913 | 464996 |
| CDS | 465149 | 465269 |
| CDS | 465700 | 465848 |
| CDS | 468302 | 468340 |
| CDS | 468989 | 469488 |
| CDS | 469851 | 469956 |
| CDS | 470207 | 470301 |
| CDS | 470800 | 470909 |
| CDS | 471257 | 471390 |
| CDS | 471478 | 471609 |
| CDS | 471750 | 471884 |
| CDS | 472255 | 472410 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13500.5 | AAA_26 | 30 | 145 |
| PF00202.20 | Aminotran_3 | 253 | 311 |
| PF00202.20 | Aminotran_3 | 550 | 788 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Biotin metabolism | adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] | ko00780 | K00833 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008483 | transaminase activity |
| GO:0030170 | pyridoxal phosphate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.