Gene details

Annotation of co-expression genes

PH01000886G0550's details annotation

1.Annotation

ICBR annotation: RNA-binding motif protein, putative, expressed

Blast result AT3G27700 : 6.00E-134
Blast annotation: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein

2.Location

Scaffold: PH01000886
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000545	binding, SNF2 Transcription_Regulator(from iTAK) helicase activity, ubiquitin-protein ligase activity, cellular protein modification process, TOR_signaling nucleic acid binding, TORC1_complex DNA binding, hydrolase_activity,_acting_on_acid_anhydrides RNA metabolic process, RNA_transport nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, Ubiquitin_mediated_proteolysis nucleotide binding, RNA binding, ATP binding, protein binding,
coexpression network	CFinderM000891	cellular protein modification process, Ubiquitin_mediated_proteolysis binding, ubiquitin-protein ligase activity, SNF2 Transcription_Regulator(from iTAK) RNA metabolic process, intracellular,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00076.21	RRM_1	471	533

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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