PH01000890G0240's details annotation
1.Annotation
ICBR annotation: zinc finger domain, LSD1 subclass family protein, expressed
Blast result AT1G79350 : 4.30E-89
Blast annotation: RING/FYVE/PHD zinc finger superfamily protein
2.Location
Scaffold: PH01000890
Strand: -
| Region | Start | End |
| gene | 125917 | 131460 |
| mRNA | 125917 | 131460 |
| exon | 125917 | 126009 |
| exon | 126697 | 126799 |
| exon | 127226 | 127379 |
| exon | 128639 | 128715 |
| exon | 129067 | 129094 |
| exon | 129137 | 129213 |
| exon | 129334 | 129464 |
| exon | 129547 | 129720 |
| exon | 129849 | 129944 |
| exon | 130614 | 131460 |
| CDS | 125992 | 126009 |
| CDS | 126697 | 126799 |
| CDS | 127226 | 127379 |
| CDS | 128639 | 128715 |
| CDS | 129067 | 129094 |
| CDS | 129137 | 129213 |
| CDS | 129334 | 129464 |
| CDS | 129547 | 129720 |
| CDS | 129849 | 129944 |
| CDS | 130614 | 131198 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13872.5 | AAA_34 | 237 | 357 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.