PH01000901G0710's details annotation
1.Annotation
ICBR annotation: hydroxylase, putative
Blast result AT5G20400 : 2.80E-35
Blast annotation: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
2.Location
Scaffold: PH01000901
Strand: -
| Region | Start | End |
| gene | 456448 | 459171 |
| mRNA | 456448 | 459171 |
| exon | 456448 | 456970 |
| exon | 457095 | 457287 |
| exon | 457350 | 457528 |
| exon | 458240 | 459171 |
| CDS | 456698 | 456970 |
| CDS | 457095 | 457287 |
| CDS | 457350 | 457528 |
| CDS | 458240 | 458275 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03171.19 | 2OG-FeII_Oxy | 74 | 166 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016491 | oxidoreductase activity |
| GO:0016706 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.