Annotation of co-expression genes

PH01000943G0560's details annotation

1.Annotation

ICBR annotation: SKIP/SNW domain containing protein, expressed

Blast result AT1G77180 : 0.00E+00
Blast annotation: chromatin protein family

2.Location

Scaffold: PH01000943
Strand: -

RegionStartEnd
gene335832340283
mRNA335832340283
exon335832340283
CDS337541339319

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001313spliceosomal complex,
aminopeptidase activity,
ubiquitin thiolesterase activity,
nuclear mRNA splicing, via spliceosome,
Spliceosome

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02731.14SKIP_SNW177336

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
SpliceosomeSNW domain-containing protein 1ko03041K06063

10.Gene Ontology

GO AccessionGO Annotation
GO:0000398mRNA splicing, via spliceosome
GO:0005681spliceosomal complex

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.