PH01000946G0220's details annotation
1.Annotation
ICBR annotation: tetratricopeptide repeat domain containing protein, expressed
Blast result AT1G17680 : 1.90E-21
Blast annotation: tetratricopeptide repeat (TPR)-containing protein
2.Location
Scaffold: PH01000946
Strand: -
| Region | Start | End |
| gene | 144003 | 147779 |
| mRNA | 144003 | 147779 |
| exon | 144003 | 144502 |
| exon | 144674 | 144800 |
| exon | 146389 | 146460 |
| exon | 146547 | 146622 |
| exon | 147395 | 147779 |
| CDS | 144384 | 144502 |
| CDS | 144674 | 144800 |
| CDS | 146389 | 146460 |
| CDS | 146547 | 146622 |
| CDS | 147395 | 147618 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.