PH01000948G0300's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result AT4G34100 : 0.00E+00
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01000948
Strand: -
| Region | Start | End |
| gene | 178409 | 185443 |
| mRNA | 178409 | 185443 |
| exon | 178409 | 180020 |
| exon | 180300 | 180446 |
| exon | 180709 | 180809 |
| exon | 180934 | 181091 |
| exon | 181426 | 181800 |
| exon | 181898 | 182109 |
| exon | 182212 | 182979 |
| exon | 183602 | 184282 |
| exon | 185027 | 185443 |
| CDS | 179508 | 180020 |
| CDS | 180300 | 180446 |
| CDS | 180709 | 180809 |
| CDS | 180934 | 181091 |
| CDS | 181426 | 181800 |
| CDS | 181898 | 182109 |
| CDS | 182212 | 182979 |
| CDS | 183602 | 184282 |
| CDS | 185027 | 185254 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001065 | threonine-type endopeptidase activity, endopeptidase activity, proteasome core complex, proteolysis involved in cellular protein catabolic process, Proteasome thiol oxidase activity, Protein_processing_in_endoplasmic_reticulum proteasome core complex, alpha-subunit complex, Retinol_metabolism |
| coexpression network | CFinderM001635 | Ribosome translation, Ribosome intracellular, C3H Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12906.6 | RINGv | 32 | 78 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | E3 ubiquitin-protein ligase MARCH6 [EC:6.3.2.19] | ko04141 | K10661 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.