PH01000948G0430's details annotation
1.Annotation
ICBR annotation: paxneb-related protein, putative, expressed
Blast result AT3G11220 : 7.60E-25
Blast annotation: Paxneb protein-related
2.Location
Scaffold: PH01000948
Strand: -
| Region | Start | End |
| gene | 278010 | 282303 |
| mRNA | 278010 | 282303 |
| exon | 278010 | 279111 |
| exon | 279409 | 279450 |
| exon | 279581 | 279680 |
| exon | 279839 | 279995 |
| exon | 280409 | 280495 |
| exon | 281185 | 282303 |
| CDS | 278932 | 279111 |
| CDS | 279409 | 279450 |
| CDS | 279581 | 279680 |
| CDS | 279839 | 279995 |
| CDS | 280409 | 280495 |
| CDS | 281185 | 281299 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05625.10 | PAXNEB | 43 | 168 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006357 | regulation of transcription from RNA polymerase II promoter |
| GO:0033588 | Elongator holoenzyme complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.