PH01000952G0060's details annotation
1.Annotation
ICBR annotation: coiled-coil domain-containing protein, putative, expressed
Blast result AT1G25682 : 3.40E-89
Blast annotation: Family of unknown function (DUF572)
2.Location
Scaffold: PH01000952
Strand: -
| Region | Start | End |
| gene | 23707 | 29259 |
| mRNA | 23707 | 29259 |
| exon | 23707 | 24266 |
| exon | 24357 | 24520 |
| exon | 24608 | 24767 |
| exon | 27183 | 27291 |
| exon | 28465 | 28544 |
| exon | 28648 | 28710 |
| exon | 28899 | 29259 |
| CDS | 23913 | 24266 |
| CDS | 24357 | 24520 |
| CDS | 24608 | 24767 |
| CDS | 27183 | 27291 |
| CDS | 28465 | 28544 |
| CDS | 28648 | 28710 |
| CDS | 28899 | 28901 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04502.12 | DUF572 | 11 | 193 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.