PH01000957G0040's details annotation
1.Annotation
ICBR annotation: nucleolar GTPase, putative, expressed
Blast result AT1G54920 : 3.50E-20
Blast annotation: -
2.Location
Scaffold: PH01000957
Strand: +
| Region | Start | End |
| gene | 10110 | 15596 |
| mRNA | 10110 | 15596 |
| exon | 10110 | 10614 |
| exon | 10790 | 11125 |
| exon | 14065 | 14202 |
| exon | 14810 | 15596 |
| CDS | 10443 | 10614 |
| CDS | 10790 | 11125 |
| CDS | 14065 | 14202 |
| CDS | 14810 | 15402 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00078.26 | RVT_1 | 350 | 408 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003964 | RNA-directed DNA polymerase activity |
| GO:0006278 | RNA-dependent DNA replication |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.