Annotation of co-expression genes

PH01000966G0170's details annotation

1.Annotation

ICBR annotation: POLD3 - Putative DNA polymerase delta complex subunit, expressed

Blast result AT1G78650 : 3.80E-71
Blast annotation: DNA-directed DNA polymerases

2.Location

Scaffold: PH01000966
Strand: -

RegionStartEnd
gene146881151928
mRNA146881151928
exon146881146978
exon147053147134
exon147599148090
exon148234148646
exon148891149050
exon149277149401
exon149485149540
exon150260151928
CDS146954146978
CDS147053147134
CDS147599148090
CDS148234148646
CDS148891149050
CDS149277149401
CDS149485149540
CDS150260150337

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF09507.9CDC2725470

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Purine metabolismDNA polymerase delta subunit 3ko00230K03504
Pyrimidine metabolismDNA polymerase delta subunit 3ko00240K03504
DNA replicationDNA polymerase delta subunit 3ko03030K03504
Base excision repairDNA polymerase delta subunit 3ko03410K03504
Nucleotide excision repairDNA polymerase delta subunit 3ko03420K03504
Mismatch repairDNA polymerase delta subunit 3ko03430K03504
Homologous recombinationDNA polymerase delta subunit 3ko03440K03504

10.Gene Ontology

GO AccessionGO Annotation
GO:0005634nucleus
GO:0006260DNA replication

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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