PH01000971G0600's details annotation
1.Annotation
ICBR annotation: TATA-binding protein, putative, expressed
Blast result AT1G55520 : 4.00E-102
Blast annotation: TATA binding protein 2
2.Location
Scaffold: PH01000971
Strand: +
| Region | Start | End |
| gene | 417737 | 423747 |
| mRNA | 417737 | 423747 |
| exon | 417737 | 418124 |
| exon | 419235 | 419322 |
| exon | 420138 | 420209 |
| exon | 420814 | 420864 |
| exon | 420942 | 420986 |
| exon | 421076 | 421168 |
| exon | 421272 | 421373 |
| exon | 421451 | 421613 |
| exon | 422091 | 423747 |
| CDS | 418048 | 418124 |
| CDS | 419235 | 419322 |
| CDS | 420138 | 420209 |
| CDS | 420814 | 420864 |
| CDS | 420942 | 420986 |
| CDS | 421076 | 421168 |
| CDS | 421272 | 421373 |
| CDS | 421451 | 421613 |
| CDS | 422091 | 422095 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00352.20 | TBP | 24 | 103 |
| PF00352.20 | TBP | 112 | 194 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Basal transcription factors | transcription initiation factor TFIID TATA-box-binding protein | ko03022 | K03120 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0006352 | DNA-dependent transcription, initiation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.