Annotation of co-expression genes

PH01001008G0510's details annotation

1.Annotation

ICBR annotation: cytochrome P450 72A1, putative, expressed

Blast result AT3G14680 : 8.00E-128
Blast annotation: cytochrome P450, family 72, subfamily A, polypeptide 14

2.Location

Scaffold: PH01001008
Strand: -

RegionStartEnd
gene404424406640
mRNA404424406640
exon404424404943
exon405040405424
exon405589405833
exon406027406169
exon406287406640
CDS404518404943
CDS405040405424
CDS405589405833
CDS406027406169
CDS406287406578

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00067.21p450144472

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Tryptophan metabolismunspecific monooxygenase [EC:1.14.14.1]ko00380K00493
Aminobenzoate degradationunspecific monooxygenase [EC:1.14.14.1]ko00627K00493
Fatty acid metabolismunspecific monooxygenase [EC:1.14.14.1]ko01212K00493

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.