PH01001015G0560's details annotation
1.Annotation
ICBR annotation: auxin-repressed protein, putative, expressed
Blast result AT1G56220 : 1.70E-13
Blast annotation: Dormancy/auxin associated family protein
2.Location
Scaffold: PH01001015
Strand: -
| Region | Start | End |
| gene | 430220 | 431774 |
| mRNA | 430220 | 431774 |
| exon | 430220 | 430493 |
| exon | 431264 | 431458 |
| exon | 431566 | 431774 |
| CDS | 430489 | 430493 |
| CDS | 431264 | 431458 |
| CDS | 431566 | 431677 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001194 | bZIP Transcription_Regulator(from PlantTFDB) RNA_degradation sequence-specific DNA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05564.11 | Auxin_repressed | 7 | 78 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.