PH01001016G0350's details annotation
1.Annotation
ICBR annotation: ubiquitin family protein, putative, expressed
Blast result AT2G30105 : 6.00E-100
Blast annotation: -
2.Location
Scaffold: PH01001016
Strand: +
| Region | Start | End |
| gene | 251684 | 257906 |
| mRNA | 251684 | 257906 |
| exon | 251684 | 252565 |
| exon | 252976 | 253140 |
| exon | 254362 | 254472 |
| exon | 254569 | 254669 |
| exon | 255429 | 255566 |
| exon | 256069 | 256117 |
| exon | 256248 | 256313 |
| exon | 256998 | 257117 |
| exon | 257524 | 257906 |
| CDS | 252248 | 252565 |
| CDS | 252976 | 253140 |
| CDS | 254362 | 254472 |
| CDS | 254569 | 254669 |
| CDS | 255429 | 255566 |
| CDS | 256069 | 256117 |
| CDS | 256248 | 256313 |
| CDS | 256998 | 257117 |
| CDS | 257524 | 257646 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001302 | membrane coat, malic enzyme activity, malate_dehydrogenase_(decarboxylating)_(NAD+)_activity malate metabolic process, |
| coexpression network | CFinderM001528 | SNARE_interactions_in_vesicular_transport SNAP receptor activity, Phagosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13855.5 | LRR_8 | 291 | 349 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.