PH01001024G0090's details annotation
1.Annotation
ICBR annotation: OsRR4 type-A response regulator, expressed
Blast result AT2G41310 : 1.30E-55
Blast annotation: response regulator 3
2.Location
Scaffold: PH01001024
Strand: +
| Region | Start | End |
| gene | 76008 | 79858 |
| mRNA | 76008 | 79858 |
| exon | 76008 | 77424 |
| exon | 77538 | 77638 |
| exon | 77755 | 77832 |
| exon | 77942 | 78012 |
| exon | 79422 | 79858 |
| CDS | 77319 | 77424 |
| CDS | 77538 | 77638 |
| CDS | 77755 | 77832 |
| CDS | 77942 | 78012 |
| CDS | 79422 | 79725 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Others |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00072.23 | Response_reg | 12 | 140 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | two-component response regulator ARR-A family | ko04075 | K14492 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000156 | phosphorelay response regulator activity |
| GO:0000160 | phosphorelay signal transduction system |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.