PH01001027G0150's details annotation
1.Annotation
ICBR annotation: patatin, putative, expressed
Blast result AT2G26560 : 5.00E-129
Blast annotation: phospholipase A 2A
2.Location
Scaffold: PH01001027
Strand: +
| Region | Start | End |
| gene | 82750 | 86174 |
| mRNA | 82750 | 86174 |
| exon | 82750 | 82985 |
| exon | 83629 | 83810 |
| exon | 83886 | 84015 |
| exon | 84338 | 84499 |
| exon | 85375 | 85677 |
| exon | 85768 | 86174 |
| CDS | 82848 | 82985 |
| CDS | 83629 | 83810 |
| CDS | 83886 | 84015 |
| CDS | 84338 | 84499 |
| CDS | 85375 | 85677 |
| CDS | 85768 | 85953 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01734.21 | Patatin | 22 | 209 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006629 | lipid metabolic process |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.