PH01001028G0480's details annotation
1.Annotation
ICBR annotation: GTP-binding protein, putative, expressed
Blast result AT1G72660 : 1.50E-79
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01001028
Strand: -
| Region | Start | End |
| gene | 331903 | 335852 |
| mRNA | 331903 | 335852 |
| exon | 331903 | 331958 |
| exon | 332024 | 332080 |
| exon | 332186 | 332366 |
| exon | 332792 | 332868 |
| exon | 333126 | 333193 |
| exon | 333842 | 335852 |
| CDS | 331950 | 331958 |
| CDS | 332024 | 332080 |
| CDS | 332186 | 332366 |
| CDS | 332792 | 332868 |
| CDS | 333126 | 333193 |
| CDS | 333842 | 333911 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01926.22 | MMR_HSR1 | 64 | 148 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.