PH01001032G0100's details annotation
1.Annotation
ICBR annotation: heat shock protein DnaJ, putative, expressed
Blast result AT1G61770 : 4.00E-123
Blast annotation: Chaperone DnaJ-domain superfamily protein
2.Location
Scaffold: PH01001032
Strand: +
| Region | Start | End |
| gene | 67574 | 76009 |
| mRNA | 67574 | 76009 |
| exon | 67574 | 69765 |
| exon | 69865 | 69927 |
| exon | 70035 | 70101 |
| exon | 70981 | 71040 |
| exon | 72388 | 72438 |
| exon | 72530 | 72610 |
| exon | 73405 | 73517 |
| exon | 74460 | 74577 |
| exon | 74741 | 74867 |
| exon | 75533 | 76009 |
| CDS | 69662 | 69765 |
| CDS | 69865 | 69927 |
| CDS | 70035 | 70101 |
| CDS | 70981 | 71040 |
| CDS | 72388 | 72438 |
| CDS | 72530 | 72610 |
| CDS | 73405 | 73517 |
| CDS | 74460 | 74577 |
| CDS | 74741 | 74867 |
| CDS | 75533 | 75636 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001467 | HMG Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001771 | Terpenoid_backbone_biosynthesis isoprenoid biosynthetic process, regulation of Rab GTPase activity, Rab GTPase activator activity, acid-amino acid ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00226.30 | DnaJ | 29 | 90 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.